Female human iPSC donor-derived microglia for pre-clinical studies
Day 4 phagocytosis female microglia WHITE BACKGROUND
female microglia Amyloid beta 42 phagocytosis white background
day 3 cytokine release microglia female WHITE BACKGROUND
female microglia Amyloid beta 42 cytokeine secretion white background
Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells
female microglia phagocytosis 3 lots
Representative video showing human microglial cells phagocytosing pHrodo Red labelled Zymosan particles.
HMC3 vs ioMicroglia flow plots
ioMicroglia female ICC trem2 iba1
hmc3 vs ioMicroglia cytokine release white background
Rapid morphological changes in the female donor-derived cells upon reprogramming, with key ramified morphology
Time-lapse video capturing the rapid and homogeneous microglia phenotype acquisition upon thawing of cryopreserved human iPSC-derived microglia
Flow cytometry analysis of female donor-derived Microglia shows key phenotypic marker expression
Immunofluorescent analysis of the co-cultures with human iPSC-derived microglia and glutamatergic neurons
Microglia retain phagocytic function in co-culture with Glutamatergic Neurons
Co-cultures of microglia and glutamatergic neurons, morphology video
ioMicroglia Female bulk RNA seq benchmarking PCA plot
Bulk RNA sequencing analysis was performed on three independent lots of commercially available microglia
ioMicroglia mRNA transfection
Female human iPSC donor-derived microglia for pre-clinical studies
Day 4 phagocytosis female microglia WHITE BACKGROUND
female microglia Amyloid beta 42 phagocytosis white background
day 3 cytokine release microglia female WHITE BACKGROUND
female microglia Amyloid beta 42 cytokeine secretion white background
Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells
female microglia phagocytosis 3 lots
Representative video showing human microglial cells phagocytosing pHrodo Red labelled Zymosan particles.
HMC3 vs ioMicroglia flow plots
ioMicroglia female ICC trem2 iba1
hmc3 vs ioMicroglia cytokine release white background
Rapid morphological changes in the female donor-derived cells upon reprogramming, with key ramified morphology
Time-lapse video capturing the rapid and homogeneous microglia phenotype acquisition upon thawing of cryopreserved human iPSC-derived microglia
Flow cytometry analysis of female donor-derived Microglia shows key phenotypic marker expression
Immunofluorescent analysis of the co-cultures with human iPSC-derived microglia and glutamatergic neurons
Microglia retain phagocytic function in co-culture with Glutamatergic Neurons
Co-cultures of microglia and glutamatergic neurons, morphology video
ioMicroglia Female bulk RNA seq benchmarking PCA plot
Bulk RNA sequencing analysis was performed on three independent lots of commercially available microglia
ioMicroglia mRNA transfection

cat no | io1029

ioMicroglia Female

Female human iPSC donor-derived microglia

  • Cryopreserved human iPSC-derived cells powered by opti-ox, that are ready for experiments in 4 days

  • Ideal for in vitro multi-cellular neuroinflammation studies and modelling diversity in disease

  • Consistently perform key phagocytic and cytokine secretion functions, and are co-culture compatible

Place your order

Female human iPSC donor-derived microglia for pre-clinical studies

Human iPSC-derived microglia, female donor

Day 4 phagocytosis female microglia WHITE BACKGROUND

ioMicroglia readily phagocytose by day 4 post-revival

Day 4, 6 and 10 ioMicroglia Female were incubated with 1 µg/0.33 cm2 pHrodo RED labelled E. coli particles for 24 hour. Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2.

Cells readily phagocytose by day 4 post-revival in a similar response as day 10, providing a experimental window to perform this key assay.

View the phagocytosis protocol used to generate this data.

female microglia Amyloid beta 42 phagocytosis white background

Phagocytosis of Amyloidβ-42 particles by female donor-derived ioMicroglia

Day 10 female donor-derived ioMicroglia were incubated with 500 nM AF488 labelled Amyloidβ-42 (AnaSpec) for 24 hours with images acquired every 30 mins on the Incucyte. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2

View the phagocytosis protocol used to generate this data.

day 3 cytokine release microglia female WHITE BACKGROUND

Female donor-derived ioMicroglia demonstrate a measurable pro-inflammatory cytokine response by day 3

Day 3, 7, and 10 female donor-derived ioMicroglia were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours, and supernatants and analysed using the MSD V-PLEX Proinflammatory Kit. Bars represent 3 technical replicates with standard error of mean. 

A clear response is seen by day 3 post-revival, with the highest secretion levels observed at 10, demonstrating a wide time frame to perform this key assay.

View the cytokine release protocol used to generate this data.

female microglia Amyloid beta 42 cytokeine secretion white background

Female donor-derived ioMicroglia show a higher pro-inflammatory cytokine response to Amyloidβ-42 stimulation compared to male donor-derived ioMicroglia

Day 10 male donor-derived ioMicroglia and female donor-derived ioMicroglia were stimulated for 24 hours with LPS (100 ng/ml) and IFNɣ (20 ng/ml), or synthetic Amyloidβ-42 oligomers (10 μM, StressMarq). Supernatants were harvested after 24 hours and analysed with using the MSD V-PLEX Proinflammatory KitSecretion levels were normalised to cell count per field of view (FOV) to account for variations in cell density. Seeding density 80,000 cells/cm2.

A clear response to Amyloidβ-42 is seen in both cell types, with background specific differences also observed.

View the cytokine release protocol used to generate this data.

Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells

Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells 

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia from one lot were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours. Supernatants were harvested and analysed using MSD V-PLEX Proinflammatory Kit. Female donor-derived ioMicroglia secrete TNF⍺, IL-6, IL-8, IL-1b, IL-12p70 and IL-10 in response to stimuli, predominantly producing a pro-inflammatory response. This is consistent across three independent lots. Female donor-derived ioMicroglia show a higher level of secretion of IL-8 and IL-1β cytokines, and a lower level of IL-12p70 cytokine than male donor-derived ioMicroglia. Three technical replicates were performed per lot. 

View the cytokine release protocol used to generate this data.

female microglia phagocytosis 3 lots

Female donor-derived ioMicroglia display a consistent degree of phagocytosis across lots

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia from one lot were incubated with pHrodo RED labelled Zymosan particles for 24 hours +/- cytochalasin D control. The graphs displays that the proportion of cells phagocytosing Zymosan particles (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right) is consistent across three independent lots and that female donor-derived ioMicroglia cells display a higher proportion of phagocytosis than male donor-derived cells.  Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. Three technical replicates were performed per lot.

View the phagocytosis protocol used to generate this data.

Female donor-derived ioMicroglia phagocytose Zymosan particles 

Representative video showing female donor-derived ioMicroglia (io1029) phagocytosing pHrodo Red labelled Zymosan particles. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 2-minute intervals over a time period of 2 hours using the 3D Cell Explorer 96focus Nanolive Imaging system.

HMC3 vs ioMicroglia flow plots

Flow cytometry analysis reveals HMC3 cells do not express key microglia markers

Dot plots of cells expressing key Microglia associated markers P2RY12, CX3CR1, CD11b, CD14 and CD45. HMC3 cells show low expression of these markers. Male and female donor derived ioMicroglia demonstrate high expression, with minimal differences between the two backgrounds. 

ioMicroglia female ICC trem2 iba1

Female donor-derived ioMicroglia show key microglia marker expression

Immunofluorescent staining of day 10 female donor-derived ioMicroglia shows homogenous expression of IBA1 and TREM2, and a typical ramified morphology. DAPI counterstain (blue). Image taken at 10x magnification.

hmc3 vs ioMicroglia cytokine release white background

HMC3 cells show a blunted cytokine secretion response compared to ioMicroglia

Male and female donor-derived ioMicroglia demonstrate a much higher cytokine secretion response following immunostimulation. Cells were stimulated for 24 hours with LPS (100 ng/ml) and IFNɣ (20 ng/ml). Supernatants were harvested after 24 hours and analysed with using the MSD V-PLEX Proinflammatory KitSeeding density 60,000 cells/cm2. Bars represent 3 technical replicates with standard deviation of mean.

Rapid morphological changes in the female donor-derived cells upon reprogramming, with key ramified morphology

Female donor-derived ioMicroglia show ramified morphology by day 10

Rapid morphological changes in the female donor-derived cells upon reprogramming, with key ramified morphology first identified by day 4 and continuing through to day 10. Day 1 to 10 post-thawing; 100x magnification.

opti-ox precision deterministic programmed ioMicroglia from a female donor rapidly form a homogenous microglia population.

Time-lapse video capturing the rapid and homogeneous microglia phenotype acquisition upon thawing of cryopreserved female donor-derived ioMicroglia. 10 day time course.

Flow cytometry analysis of female donor-derived Microglia shows key phenotypic marker expression

Flow cytometry analysis of female donor-derived ioMicroglia shows key phenotypic marker expression 

Flow cytometry analysis of day 10 female donor-derived ioMicroglia shows key microglia marker expression of CD11b, CD45, CD14, and P2RY12 with a purity of above 97% for all these markers. 

View the cell detachment protocol used to generate this data.

Immunofluorescent analysis of the co-cultures with human iPSC-derived microglia and glutamatergic neurons

Key marker expression in female donor-derived ioMicroglia and ioGlutamatergic Neuron co-cultures

Immunofluorescent analysis at day 8 of the co-cultures shows expression of the microglia marker, IBA1 (green) and the pan-neuronal marker, MAP2 (red), as expected. Representative images taken at 10x magnification.

View the co-culture protocol used to generate this data.

Female donor-derived ioMicroglia retain phagocytic function in co-culture with ioGlutamatergic Neurons

Representative video showing female-derived donor ioMicroglia in co-culture with ioGlutamatergic Neurons selectively phagocytosing pHrodo Red labelled Zymosan particles after 10 days in co-culture, without any observed adverse effects on neuron morphology. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 8-minute intervals over a time period of 1 hour and 36 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

View the co-culture protocol used to generate this data.

Female donor-derived ioMicroglia form co-cultures with  ioGlutamatergic Neurons 

ioGlutamatergic Neurons (io1001) were cultured to day 10 post-thaw. Female donor-derived ioMicroglia (io1029) cultured to either day 1 or day 10 post-thaw were added directly to day 10 ioGlutamatergic Neurons. The co-cultures were maintained for a further 6 days. Representative video showing that female donor-derived ioMicroglia form a stable co-culture with ioGlutamatergic Neurons. Live imaging was performed in 6.5-minute intervals over a time period of 3 hours and 31 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

View the co-culture protocol used to generate this data.

ioMicroglia Female bulk RNA seq benchmarking PCA plot

Whole transcriptome analysis demonstrates that female donor-derived ioMicroglia are highly similar to primary adult, foetal and other iPSC-derived microglia

Principal component analysis of bulk RNA sequencing data from female donor-derived ioMicroglia, integrated with sequencing data from Abud et al. (1) shows that these cells cluster closely to primary foetal and adult microglia data sets derived from this publication. Shapes represent the experiment from which data was obtained and colours represent the cell type.

(1) Abud E, et al., Neuron, 2018; 94(2): 278-293

Bulk RNA sequencing analysis was performed on three independent lots of commercially available microglia

Whole transcriptome analysis demonstrates high lot-to-lot consistency of female donor-derived ioMicroglia

Bulk RNA sequencing analysis was performed on three independent lots of female donor-derived ioMicroglia at three different time points throughout the reprogramming protocol. Principal component analysis represents the variance in gene expression between the lots and shows the high consistency across each lot at each given time point. Populations of female donor-derived ioMicroglia with equivalent expression profiles can be generated consistently from every vial, allowing confidence in experimental reproducibility.

ioMicroglia mRNA transfection

ioMicroglia are efficiently transfected with mRNA encoding GFP

ioMicroglia Male are efficiently transfected and show sustained long-term expression of mRNA encoding GFP. Cells were imaged throughout the experiment to assess transfection efficiency and evaluate potential cytotoxic effects of the transfection protocol. Day 4 images were captured prior to transfections on the same day.

Download the step-by-step protocol for lipid-based delivery of synthetic mRNA into ioMicroglia.

Vial limit exceeded

A maximum number of 20 vials applies. If you would like to order more than 20 vials, please contact us at orders@bit.bio.

Female human iPSC donor-derived microglia

ioMicroglia (io1029) are female donor-derived human microglial cells from iPSC, deterministically programmed using opti-ox technology.

ioMicroglia demonstrate key functionalities by day 4 post-revival, and are highly pure, expressing (>90%) key microglia markers, including P2RY12, IBA1, TREM2, CX3CR1, CD11b, CD45, and CD14 at day 10.

Female donor-derived ioMicroglia recapitulate key human microglia functions with lot-to-lot consistency, including cytokine release upon stimulation, phagocytosis,  and enhancing neural networks in co-culture with ioGlutamatergic Neurons.

Female donor-derived ioMicroglia provide a functional, consistent, rapid, and easy-to-use hiPSC-based model for neurodegenerative disease research and drug development. These cells can be used in conjunction with our male iPSC donor-derived ioMicroglia (io1021) and related disease models for Alzheimer's to study the effect of donor and sex-related differences and disease relevant mutations on microglia phenotype, functionality, and drug response.

Benchtop benefits

functional_0

Functional

ioMicroglia display key phagocytic and cytokine secretion functions with lot-to-lot consistency.

quick_0

Quick

Rapidly maturing, ready to use within 4 days post-revival for functional experiments.

culture_0

Co-culture compatible

Suitable for co-culture with neurons immediately post-thaw.

Cells arrive ready to plate


Microglia_timeline_4_days

Female donor-derived ioMicroglia are delivered in a cryopreserved format and are programmed to rapidly mature upon revival in the recommended media. The protocol for the generation of these cells is a three-phase process: Phase 1: Stabilisation for 24 hours, Phase 2: Maturation for a further 9 days, Phase 3: the Maintenance phase. Cells are ready to use from day 4 for phagocytosis and cytokine secretion experiments.

Product specifications

Starting material

Human iPSC line

Seeding compatibility

6, 12, 24, 96 & 384 well plates

Shipping info

Dry ice

Donor

Asian-Indian female (blood endothelial progenitor cells (EPCs)),
Age 20 years old,
Genotype APOE 2/3

Vial size

Small: >1.5 x 10⁶ viable cells, Large: >5 x 10⁶ viable cells, Evaluation pack*: 3 small vials of >1.5 x 10⁶ viable cells

Quality control

Sterility, protein expression (ICC), and functional phagocytosis, purity assay (FACS).

Differentiation method

opti-ox deterministic cell programming

Recommended seeding density

40,000 to 80,000 cells/cm²

User storage

LN2 or -150°C

Format

Cryopreserved cells

Product use

ioCells are for research use only

Applications

Neurodegenerative disease modelling
Drug discovery and development
Neuroinflammation modelling
Phagocytosis assays
Cytokine response assays
Co-culture studies
Transcriptome analysis

* Evaluation packs are intended for first-time users, or for existing users testing a new cell type or derivative. A user can request multiple evaluation packs as long as each one is for a different product, with only one pack allowed per product.

What scientists say about ioMicroglia

An image of Matteo Zanella, PhD

Matteo Zanella, PhD

Associate Research Leader | Charles River

"At Charles River we used bit.bio ioMicroglia in several projects. We are very satisfied with their performances, as they efficiently and robustly recapitulate both morphological and functional properties of microglia cells"

Technical data

Ready within days

opti-ox precision deterministic programmed ioMicroglia from a female donor rapidly form a homogenous microglia population.

Time-lapse video capturing the rapid and homogeneous microglia phenotype acquisition upon thawing of cryopreserved female donor-derived ioMicroglia. 10 day time course.

Highly characterised and defined

Flow cytometry analysis of female donor-derived ioMicroglia shows key phenotypic marker expression 

ioMicroglia flow cytometry graphs_NEW

Flow cytometry analysis of day 10 female donor-derived ioMicroglia shows key microglia marker expression of CD11b, CD45, CD14, and P2RY12 with a purity of above 97% for all these markers. 

View the cell detachment protocol used to generate this data.

Female donor-derived ioMicroglia show key microglia marker expression

ioMicroglia female ICC trem2 iba1

Immunofluorescent staining of day 10 female donor-derived ioMicroglia shows homogenous expression of P2RY12, IBA1 and TREM2, and a typical ramified morphology. DAPI counterstain (blue). Image taken at 10x magnification.

Female donor-derived ioMicroglia show ramified morphology by day 10

ioMicroglia female morphology panel FINAL 4

Rapid morphological changes in the female donor-derived cells upon reprogramming, with key ramified morphology first identified by day 4 and continuing through to day 10. Day 1 to 10 post-thawing; 100x magnification.

Whole transcriptome analysis demonstrates high lot-to-lot consistency of female donor-derived ioMicroglia

ioMicroglia Female bulk RNA seq lot to lot consistency PCA plot_FINAL3

Bulk RNA sequencing analysis was performed on three independent lots of female donor-derived ioMicroglia at three different time points throughout the reprogramming protocol. Principal component analysis represents the variance in gene expression between the lots and shows the high consistency across each lot at each given time point. Populations of female donor-derived ioMicroglia with equivalent expression profiles can be generated consistently from every vial, allowing confidence in experimental reproducibility.

Whole transcriptome analysis demonstrates that female donor-derived ioMicroglia are highly similar to primary adult, foetal and other iPSC-derived microglia

ioMicroglia Female bulk RNA seq benchmarking PCA plot_FINAL3

Principal component analysis of bulk RNA sequencing data from female donor-derived ioMicroglia, integrated with sequencing data from Abud et al. (1) shows that these cells cluster closely to primary foetal and adult microglia data sets derived from this publication. Shapes represent the experiment from which data was obtained and colours represent the cell type.

(1) Abud E, et al., Neuron, 2018; 94(2): 278-293

Key functions with consistency

ioMicroglia readily phagocytose by day 4 post-revival
Day 4 phagocytosis female microglia

Day 4, 6 and 10 ioMicroglia Female were incubated with 1 µg/0.33 cm2 pHrodo RED labelled E. coli particles for 24 hour. Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2.

Cells readily phagocytose by day 4 post-revival in a similar response as day 10, providing a experimental window to perform this key assay.

View the phagocytosis protocol used to generate this data.

.

Female donor-derived ioMicroglia display a different level of phagocytosis than male donor-derived cells 

female microglia phagocytosis 3 lots

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia (io1021) from one lot were incubated with pHrodo RED labelled Zymosan particles for 24 hours +/- cytochalasin D control. The graphs displays that the proportion of cells phagocytosing Zymosan particles (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right) is consistent across three independent lots and that female donor-derived ioMicroglia cells display a higher proportion of phagocytosis than male donor-derived cells.  Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. Three technical replicates were performed per lot.

View the phagocytosis protocol used to generate this data.

Phagocytosis of Amyloidβ-42 particles by female donor-derived ioMicroglia 

female microglia Amyloid beta 42 phagocytosis

Day 10 female donor-derived ioMicroglia were incubated with 500 nM AF488 labelled Amyloidβ-42 (AnaSpec) for 24 hours with images acquired every 30 mins on the Incucyte. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2

View the phagocytosis protocol used to generate this data.

Female donor-derived ioMicroglia phagocytose Zymosan particles 

Representative video showing female donor-derived ioMicroglia phagocytosing pHrodo Red labelled Zymosan particles. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 2-minute intervals over a time period of 2 hours using the 3D Cell Explorer 96focus Nanolive Imaging system.

Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells 

ioMicroglia Female_cytokine secretion graphs_FINAL 2

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia from one lot were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours. Supernatants were harvested and analysed using MSD V-PLEX Proinflammatory Kit. Female donor-derived ioMicroglia secrete TNF⍺, IL-6, IL-8, IL-1b, IL-12p70 and IL-10 in response to stimuli, predominantly producing a pro-inflammatory response. This is consistent across three independent lots. Female donor-derived ioMicroglia show a higher level of secretion of IL-8 and IL-1β cytokines, and a lower level of IL-12p70 cytokine than male donor-derived ioMicroglia. Three technical replicates were performed per lot. 

View the cytokine release protocol used to generate this data.

Female donor-derived ioMicroglia show a higher pro-inflammatory cytokine response to Amyloidβ-42 stimulation compared to male donor-derived ioMicroglia
Amyloidbeta42 cytokine secretion

Day 10 male donor-derived ioMicroglia and female donor-derived ioMicroglia were stimulated for 24 hours with LPS (100 ng/ml) and IFNɣ (20 ng/ml), or synthetic Amyloidβ-42 oligomers (10 μM, StressMarq). Supernatants were harvested after 24 hours and analysed with using the MSD V-PLEX Proinflammatory KitSecretion levels were normalised to cell count per field of view (FOV) to account for variations in cell density. Seeding density 80,000 cells/cm2.

A clear response to Amyloidβ-42 is seen in both cell types, with background specific differences also observed.

View the cytokine release protocol used to generate this data.

Female donor-derived ioMicroglia demonstrate a measurable pro-inflammatory cytokine response by day 3

day 3 cytokine release microglia female

Day 3, 7, and 10 female donor-derived ioMicroglia were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours, and supernatants and analysed using the MSD V-PLEX Proinflammatory Kit. Bars represent 3 technical replicates with standard error of mean. 

A clear response is seen by day 3 post-revival, with the highest secretion levels observed at 10, demonstrating a wide time frame to perform this key assay.

View the cytokine release protocol used to generate this data.

Co-culture compatible

Female donor-derived ioMicroglia form co-cultures with  ioGlutamatergic Neurons 

ioGlutamatergic Neurons were cultured to day 10 post-thaw. Female donor-derived ioMicroglia were cultured to either day 1 or day 10 post-thaw were added directly to day 10 ioGlutamatergic Neurons. The co-cultures were maintained for a further 6 days. Representative video showing that female donor-derived ioMicroglia form a stable co-culture with ioGlutamatergic Neurons. Live imaging was performed in 6.5-minute intervals over a time period of 3 hours and 31 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

View the co-culture protocol used to generate this data.

Key marker expression in female donor-derived ioMicroglia and ioGlutamatergic Neuron co-cultures

ioMicroglia female coculture ICC panel FINAL

Immunofluorescent analysis at day 8 of the co-cultures shows expression of the microglia marker, IBA1 (green) and the pan-neuronal marker, MAP2 (red), as expected. Representative images taken at 10x magnification.

View the co-culture protocol used to generate this data.

Female donor-derived ioMicroglia retain phagocytic function in co-culture with ioGlutamatergic Neurons

Representative video showing female-derived donor ioMicroglia in co-culture with ioGlutamatergic Neurons selectively phagocytosing pHrodo Red labelled Zymosan particles after 10 days in co-culture, without any observed adverse effects on neuron morphology. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 8-minute intervals over a time period of 1 hour and 36 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

View the co-culture protocol used to generate this data.

Benchmarking against the HMC3 cell line

Flow cytometry analysis of key microglia markers for ioMicroglia and HMC3 cells
HMC3 vs ioMicroglia flow plots
Dot plots of cells expressing key Microglia associated markers P2RY12, CX3CR1, CD11b, CD14 and CD45. HMC3 cells show low expression of these markers. Male and female donor derived ioMicroglia demonstrate high expression, with minimal differences between the two backgrounds. 
HMC3 cells show a blunted cytokine secretion response 
HMC3 vs ioMicroglia cyokine release
Male and female donor-derived ioMicroglia demonstrate a much higher cytokine secretion response following immunostimulation. Cells were stimulated for 24 hours with LPS (100 ng/ml) and IFNɣ (20 ng/ml). Supernatants were harvested after 24 hours and analysed with using the MSD V-PLEX Proinflammatory KitSeeding density 60,000 cells/cm2. Bars represent 3 technical replicates with standard deviation of mean.

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Technical data

Phagocytosis of Zymosan particles

Female donor-derived ioMicroglia display a different level of phagocytosis than male donor-derived cells 

female microglia phagocytosis 3 lots

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia from one lot were incubated with pHrodo RED labelled Zymosan particles for 24 hours +/- cytochalasin D control. The graphs displays that the proportion of cells phagocytosing Zymosan particles (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right) is consistent across three independent lots and that female donor-derived ioMicroglia cells display a higher proportion of phagocytosis than male donor-derived cells.  Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. Three technical replicates were performed per lot.

ioMicroglia readily phagocytose by day 4 post-revival
Day 4 phagocytosis female microglia

Day 4, 6 and 10 ioMicroglia Female were incubated with 1 µg/0.33 cm2 pHrodo RED labelled E. coli particles for 24 hour. Images were acquired every 30 mins on the Incucyte looking at red fluorescence and phase contrast. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2.

Cells readily phagocytose by day 4 post-revival in a similar response as day 10, providing a experimental window to perform this key assay.

Female donor-derived ioMicroglia phagocytose Zymosan particles 

Representative video showing female donor-derived ioMicroglia (io1029) phagocytosing pHrodo Red labelled Zymosan particles. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 2-minute intervals over a time period of 2 hours using the 3D Cell Explorer 96focus Nanolive Imaging system.

Phagocytosis of Amyloid β-42 particles by female donor-derived ioMicroglia 
female microglia Amyloid beta 42 phagocytosis

Day 10 female donor-derived ioMicroglia were incubated with 500 nM AF488 labelled Amyloidβ-42 (AnaSpec) for 24 hours with images acquired every 30 mins on the Incucyte. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). Three technical replicates were performed. Seeding density 60,000 cells/cm2.

Cytokine secretion following stimulation

Female donor-derived ioMicroglia display a different pro-inflammatory cytokine response to male donor-derived cells 

ioMicroglia Female_cytokine secretion graphs_FINAL 2

Day 10 female donor-derived ioMicroglia from three independent lots and male donor-derived ioMicroglia from one lot were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours. Supernatants were harvested and analysed using MSD V-PLEX Proinflammatory Kit. Female donor-derived ioMicroglia secrete TNF⍺, IL-6, IL-8, IL-1b, IL-12p70 and IL-10 in response to stimuli, predominantly producing a pro-inflammatory response. This is consistent across three independent lots. Female donor-derived ioMicroglia show a higher level of secretion of IL-8 and IL-1β cytokines, and a lower level of IL-12p70 cytokine than male donor-derived ioMicroglia. Three technical replicates were performed per lot. 

Female donor-derived ioMicroglia show a higher pro-inflammatory cytokine response to Amyloidβ-42 stimulation compared to male donor-derived ioMicroglia
Amyloidbeta42 cytokine secretion

Day 10 male donor-derived ioMicroglia and female donor-derived ioMicroglia were stimulated for 24 hours with LPS (100 ng/ml) and IFNɣ (20 ng/ml), or synthetic Amyloidβ-42 oligomers (10 μM, StressMarq). Supernatants were harvested after 24 hours and analysed with using the MSD V-PLEX Proinflammatory KitSecretion levels were normalised to cell count per field of view (FOV) to account for variations in cell density. Seeding density 80,000 cells/cm2.

A clear response to Amyloidβ-42 is seen in both cell types, with background specific differences also observed.

Female donor-derived ioMicroglia demonstrate a measurable pro-inflammatory cytokine response by day 3
day 3 cytokine release microglia female

Day 3, 7, and 10 female donor-derived ioMicroglia were stimulated with LPS (100 ng/ml) and IFNɣ (20 ng/ml) for 24 hours, and supernatants and analysed using the MSD V-PLEX Proinflammatory Kit. Bars represent 3 technical replicates with standard error of mean. 

A clear response is seen by day 3 post-revival, with the highest secretion levels observed at 10, demonstrating a wide time frame to perform this key assay.

Neuron and microglia co-cultures with phagocytic functionality

Female donor-derived ioMicroglia form co-cultures with  ioGlutamatergic Neurons 

ioGlutamatergic Neurons were cultured to day 10 post-thaw. Female donor-derived ioMicroglia cultured to either day 1 or day 10 post-thaw were added directly to day 10 ioGlutamatergic Neurons. The co-cultures were maintained for a further 6 days. Representative video showing that female donor-derived ioMicroglia form a stable co-culture with ioGlutamatergic Neurons. Live imaging was performed in 6.5-minute intervals over a time period of 3 hours and 31 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

Key marker expression in female donor-derived ioMicroglia and ioGlutamatergic Neuron co-cultures

ioMicroglia female coculture ICC panel FINAL

Immunofluorescent analysis at day 8 of the co-cultures shows expression of the microglia marker, IBA1 (green) and the pan-neuronal marker, MAP2 (red), as expected. Representative images taken at 10x magnification.

Female donor-derived ioMicroglia retain phagocytic function in co-culture with ioGlutamatergic Neurons

Representative video showing female-derived donor ioMicroglia in co-culture with ioGlutamatergic Neurons selectively phagocytosing pHrodo Red labelled Zymosan particles after 10 days in co-culture, without any observed adverse effects on neuron morphology. When female donor-derived ioMicroglia engulf these particles this causes the particles to fluoresce red, within the cells, due to the drop in pH in the phagolysosome. Live imaging was performed in 8-minute intervals over a time period of 1 hour and 36 minutes using the 3D Cell Explorer 96focus Nanolive Imaging system.

Flow cytometry analysis of microglia markers

Flow cytometry analysis of female donor-derived ioMicroglia shows key phenotypic marker expression 

ioMicroglia flow cytometry graphs_NEW

Flow cytometry analysis of day 10 female donor-derived ioMicroglia shows key microglia marker expression of CD11b, CD45, CD14, and P2RY12 with a purity of above 97% for all these markers. 

mRNA transfection

ioMicroglia are efficiently transfected with mRNA encoding GFP
ioMicroglia mRNA transfection

ioMicroglia Male are efficiently transfected and show sustained long-term expression of mRNA encoding GFP. Cells were imaged throughout the experiment to assess transfection efficiency and evaluate potential cytotoxic effects of the transfection protocol. Day 4 images were captured prior to transfections on the same day.

Data exchange program

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How to culture ioMicroglia

In this video, our scientist will take you through the step-by-step process of how to thaw, seed and culture ioMicroglia.

Product resources

Quantifying C5a-mediated chemotaxis in precision reprogrammed hiPSC-derived ioMicroglia Application note
Quantifying C5a-mediated chemotaxis in precision reprogrammed hiPSC-derived ioMicroglia

bit.bio | Medicines Discovery Catapult

2024

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Sartorius application note - Advanced in vitro Modeling of Human iPSC-derived Neuronal Mono- and Co-cultures with Microglia Application note
Sartorius application note - Advanced in vitro Modeling of Human iPSC-derived Neuronal Mono- and Co-cultures with Microglia
Trigg et al.,
Sartorius
2024
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Improving physiological relevance in neurological disease drug development Case study
Improving physiological relevance in neurological disease drug development

Elise Malavasi, PhD
Principal Scientist
Concept Life Sciences

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ioMicroglia product family Brochure
ioMicroglia product family
bit.bio
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Rapid and consistent generation of functional microglia from reprogrammed hiPSCs to study neurodegeneration and neuroinflammation Poster
Rapid and consistent generation of functional microglia from reprogrammed hiPSCs to study neurodegeneration and neuroinflammation

Raman, et al

bit.bio

2022

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Generation and characterisation of a panel of human iPSC-derived neurons and microglia carrying early and late onset relevant mutations for Alzheimer’s disease Poster
Generation and characterisation of a panel of human iPSC-derived neurons and microglia carrying early and late onset relevant mutations for Alzheimer’s disease

Smith, et al. 

bit.bio

2024

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CRISPR knockout screening for drug target identification and validation using CRISPR-Ready ioMicroglia Poster
CRISPR knockout screening for drug target identification and validation using CRISPR-Ready ioMicroglia

Schmidt, et al

bit.bio

2024

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An in vitro toolkit to study the cell-specific roles of glutamatergic neurons and glia in Alzheimer’s disease Poster
An in vitro toolkit to study the cell-specific roles of glutamatergic neurons and glia in Alzheimer’s disease

Oosterveen et al.

bit.bio

2025

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An iPSC-derived neuroinflammation/neurotoxicity in vitro model of neurons and glial cells Poster
An iPSC-derived neuroinflammation/neurotoxicity in vitro model of neurons and glial cells

Bsibsi et al.

Courtesy of Charles River Laboratories

2024

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Driving experimental reproducibility and lot-to-lot biological consistency in human iPSC-derived cells enabled by opti-ox technology Poster
Driving experimental reproducibility and lot-to-lot biological consistency in human iPSC-derived cells enabled by opti-ox technology

Newman et al.

bit.bio

2024

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Harnessing CRISPR-Ready ioCells as functional genomics tools for drug target identification and validation Poster
Harnessing CRISPR-Ready ioCells as functional genomics tools for drug target identification and validation

Grabner et al.

bit.bio

2025

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iPSC-derived Alzheimer's disease models show increased secretion of pathogenic amyloid beta peptides in glutamatergic neurons and responses to amyloid beta 42 in microglia Poster
iPSC-derived Alzheimer's disease models show increased secretion of pathogenic amyloid beta peptides in glutamatergic neurons and responses to amyloid beta 42 in microglia

Veteleanu et al.

bit.bio

2025

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A versatile toolbox of human iPSC-derived microglia for disease modelling and multicellular in vitro models for neurodegeneration drug discovery Poster
A versatile toolbox of human iPSC-derived microglia for disease modelling and multicellular in vitro models for neurodegeneration drug discovery

Yates et al.

bit.bio

2025

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Optimisation of mRNA delivery to overcome transfection challenges in hiPSC-derived neurons and microglia Poster
Optimisation of mRNA delivery to overcome transfection challenges in hiPSC-derived neurons and microglia

Tatar Ozkan et al.

bit.bio

2025

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Reprogramming the stem cell for a new generation of cures Publication
Reprogramming the stem cell for a new generation of cures

Davenport A, Frolov T & Kotter M

Drug Discovery World

2020

 

 

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Circadian clocks in human cerebral organoids Publication
Circadian clocks in human cerebral organoids

Rzechorzek, et al

bioRxiv

2024

Featuring opti-ox enabled microglia male iPS cell line and opti-ox enabled glutamatergic neurons iPS cell line

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Precision Cellular Reprogramming for Scalable and Consistent Human Neurodegenerative Disease Models Talk
Precision Cellular Reprogramming for Scalable and Consistent Human Neurodegenerative Disease Models

Madeleine Garrett | Field Application Specialist | bit.bio

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Comparing human iPSC-derived ioMicroglia to immortalised HMC3 cell line: A case study Talk
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Human Cell Forum 2025
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ioMicroglia | User manual User manual
ioMicroglia | User manual

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2025

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How to culture ioMicroglia Video tutorial
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Prachi Bhagwatwar​​​​ | ​Research Assistant | bit.bio
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Modelling human neurodegenerative diseases in research & drug discovery Webinar
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Dr Mariangela Iovino | Group Leader | Charles River

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Sex differences in neurological research Webinar
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mRNA transfection of ioMicroglia Protocol
mRNA transfection of ioMicroglia
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Phagocytosis assessment of ioMicroglia Protocol
Phagocytosis assessment of ioMicroglia
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Stimulation for cytokine secretion in ioMicroglia Protocol
Stimulation for cytokine secretion in ioMicroglia
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Cell detachment protocol for ioMicroglia Protocol
Cell detachment protocol for ioMicroglia
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Cell counting protocol for ioCells Protocol
Cell counting protocol for ioCells
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Co-culturing ioMicroglia and ioGlutamatergic Neurons Protocol
Co-culturing ioMicroglia and ioGlutamatergic Neurons
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Immunocytochemistry staining for ioMicroglia Protocol
Immunocytochemistry staining for ioMicroglia
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Beyond neurons - microglia cells and their role in neurodegeneration and neurodevelopment

An interview with a leading researcher and microglia expert Dr Anthony Vernon at King's College Institute of Psychiatry, Psychology & Neuroscience, to demystify the complex roles of microglia in our brand new blog.

bit-bio_40x ioMicroglia continuous culture

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Model neurodegeneration with a co-culture system with microglia and neurons
Build neurodegeneration disease models
Model neurodegeneration in vitro with microglia-neuron co-cultures
Expand your research
Build neurodegeneration disease models
Model neurodegeneration in vitro with microglia-neuron co-cultures
Model neurodegeneration with a co-culture system with microglia and neurons

Access more than 20 neuronal disease models with a single co-culture protocol.

View the co-culture protocol
Explore ioGlutamatergic Neuron Disease Models 

Track, visualize or isolate human iPSC-derived microglial cells.
Light up your co-cultures
Track GFP ioMicroglia in complex multi-cell cultures
Expand your research
Light up your co-cultures
Track GFP ioMicroglia in complex multi-cell cultures
Track, visualize or isolate human iPSC-derived microglial cells.

Human iPSC-derived microglia engineered to constitutively express GFP enable easy visualisation, tracking and isolation of cells in complex multi-cell cultures.

Discover the data

Move into CRISPR screens with ready-to-use human iPSC-derived cells.
Simplify gene knockouts and CRISPR screens
Have you considered CRISPRko-Ready ioMicroglia?
Expand your research
Simplify gene knockouts and CRISPR screens
Have you considered CRISPRko-Ready ioMicroglia?
Move into CRISPR screens with ready-to-use human iPSC-derived cells.

Built from our ioMicroglia Male and engineered to constitutively express Cas9. 
With optimised guide RNA delivery protocols and high knockout efficiency, start measuring readouts from gene knockouts and CRISPR screens within days.
Save months of work by skipping complex cell line engineering and cell differentiation workflows.

Discover the data

Modeling Alzheimer's disease with APOE and TREM2 mutations in hiPSC-derived microglial cells.
Model Alzheimer's disease in vitro
Access a range of hiPSC-derived microglia Alzheimer's disease models (APOE & TREM2)
Expand your research
Model Alzheimer's disease in vitro
Access a range of hiPSC-derived microglia Alzheimer's disease models (APOE & TREM2)
Modeling Alzheimer's disease with APOE and TREM2 mutations in hiPSC-derived microglial cells.
Study the role of microglia in AD with hiPSC-derived ioMicroglia Male engineered to contain Alzheimer’s disease-related risk mutations. 
Homozygous and heterozygous models are available for the following mutations:

APOE C112 
TREM2 R47H

Each ioDisease Model Cell can be paired with the genetically matched ioMicroglia Male wild type control, to help you confidently link genotype to phenotype and make true comparisons in your data.

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