CRISPRa microglia hero IBA1 ICC
CRISPRa microglia P2RY12 activation flow cytometry
CRISPRa microglia IBA1 activation ICC quantification combined
CRISPRa microglia brightfield
CRISPRa microglia IBA1 ICC
CRISPRa microglia e. coli phagocytosis
CRISPRa cyotkine secretion
CRISPRa microglia hero IBA1 ICC
CRISPRa microglia P2RY12 activation flow cytometry
CRISPRa microglia IBA1 activation ICC quantification combined
CRISPRa microglia brightfield
CRISPRa microglia IBA1 ICC
CRISPRa microglia e. coli phagocytosis
CRISPRa cyotkine secretion

cat no | io1102 Early Access

CRISPRa-Ready ioMicroglia Male

Male human iPSC donor-derived microglia expressing modified dCas9 for gene activations and CRISPRa screens

  • Cryopreserved human iPSC-derived cells powered by opti-ox that are ready for experiments within days

  • Microglia constitutively expressing modified dCas9 optimised for gene activations and CRISPRa screens

  • Perform key phagocytic and cytokine secretion functions, and are co-culture compatible

CRISPRa microglia hero IBA1 ICC

Male human iPSC donor-derived microglia expressing modified dCas9 for gene activations and CRISPRa screens

CRISPRa microglia P2RY12 activation flow cytometry

Flow cytometry analysis demonstrates gene activation of P2RY12 upon lentiviral gRNA delivery

Flow cytometry analysis confirmed robust P2RY12 gene activation in CRISPRa-Ready ioMicroglia following lentiviral delivery of a P2RY12-targeting gRNA on day 10 post-thaw using VPx-VLP for enhanced lentiviral gRNA delivery. Gene activation was assessed 5 days later. 

(A) 41% of cells were GFP+ indicating successful delivery of the P2RY12-targeting gRNA, with 83% of these GFP+ cells showing robust activation. 

(B) The dCas9 transcriptional activator induced a 10.3-fold increase in P2RY12 protein expression (orange) relative to non-targeting control (grey), as measured by geometric mean fluorescence intensity (GMFI) in the GFP+ population. 

CRISPRa microglia IBA1 activation ICC quantification combined

Immunocytochemistry analysis demonstrates gene activation of SOX11 upon lentiviral gRNA delivery in a 96-well plate

SOX11-targeting gRNAs were delivered to CRISPRa-Ready ioMicroglia on day 10 post-thaw via lentiviral transduction in a 96-well plate format, using VPx-VLP for enhanced lentiviral gRNA delivery. After 5 days, transduction and SOX11 activation efficiencies were quantified by immunocytochemistry. Comparable results were observed in 24-well plates.

(A) Representative images showing activation of SOX11 in a majority of transduced (GFP+) cells.

(B) Quantification of GFP+ cells reveals 20-30% transduction efficiency. 

(C) A high SOX11 activation efficiency of 80% was achieved in cells transduced with SOX11 gRNA.

CRISPRa microglia brightfield

CRISPRa-Ready ioMicroglia show ramified morphology by day 4

CRISPRa-Ready ioMicroglia mature rapidly; key ramified morphology can be identified by day 4 and continues through to day 10, similar to ioMicroglia Male (io1021). Day 1 to 10 post-thawing; 100x magnification.

CRISPRa microglia IBA1 ICC

CRISPRa-Ready ioMicroglia homogeneously express IBA1

Immunofluorescent staining on day 10 post-revival demonstrates homogenous expression of key microglia marker IBA1 and ramified morphology in CRISPRa-Ready ioMicroglia, similar to ioMicroglia Male (io1021). 100x magnification.

View the ICC protocol used to generate this data.

CRISPRa microglia e. coli phagocytosis

Phagocytosis of E. coli particles by CRISPRa-Ready ioMicroglia

Phagocytosis assay using pHrodo E. coli BioParticles at day 10 post-thaw demonstrates efficient uptake of bioparticles by CRISPRa-Ready ioMicroglia, in a similar manner to ioMicroglia Male (io1021) over 24 h. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). The addition of Cytochalasin D (CytoD), an inhibitor of actin polymerisation, significantly decreased E.coli particle uptake as expected.

View the phagocytosis protocol used to generate this data.

CRISPRa cyotkine secretion

CRISPRa-Ready ioMicroglia secrete pro-inflammatory cytokines upon activation

CRISPRa-Ready ioMicroglia were stimulated at day 10 post-thaw with LPS 100 ng/mL and IFNɣ 20 ng/mL for 24 hours. Cell culture supernatants were collected and cytokine secretion levels were quantified by ELISA. Upon activation, these cells secreted TNF-α and IL-6 at comparable levels to wild-type ioMicroglia Male (io1021)

View the cytokine secretion protocol used to generate this data.

Vial limit exceeded

A maximum number of 20 vials applies. If you would like to order more than 20 vials, please contact us at orders@bit.bio.

Male human iPSC donor-derived microglia expressing modified dCas9 for gene activations and CRISPRa screens

CRISPRa-Ready ioMicroglia are built from our well-established wild type ioMicroglia Male, engineered to constitutively express catalytically inactive Cas9 nuclease (dCas9) fused to a transcriptional activation domain.

These cells arrive ready for guide RNA (gRNA) delivery from day 4 to 18 post-thaw. Our optimised lentivirus gRNA delivery protocol enables users to perform CRISPRa mediated activation screens in pooled or arrayed formats and measure readouts within a few days.

Our cells arrive ready to use for functional genomics, disease model generation, drug target identification and fundamental human biology research. The cells have been deterministically programmed from human iPSCs using opti-ox technology, meaning scalability and consistency are built-in. Within days, they convert consistently to microglia characterised by >90% expression of IBA1. 

Using CRISPRa-Ready, CRISPRi-Ready and CRISPRko-Ready ioMicroglia, users can significantly cut experimental timelines by no longer needing to spend months engineering and characterising Cas9 stable iPSC lines or optimising differentiation protocols. With these cells, robust experimental readouts can be achieved by simply delivering gRNAs against your target gene. Users do not require prior expertise in iPSC differentiation or gRNA delivery optimisation.

Benchtop benefits

cas 9 expressing human microglia

Ready to use

Defined, characterised and functional human microglia constitutively expressing modified dCas9, ready for activation experiments from day 4 to day 18 post-thaw.

CRISPR knockouts in human microglia

Quick and easy

Generate readouts within days with a simple protocol for cell maturation and guide RNA delivery.

CRISPR knockouts in human microglia

Effective activation

Optimised protocols for lentivirus based guide RNA delivery in iPSC-derived cells, ensuring activation of target genes.

Schematic overview of the timeline in the user manual


bit.bio-ioCRISPR-Ready-ioMicroglia-timeline-V10.3

CRISPRa-Ready ioMicroglia are delivered in a cryopreserved format and are programmed to rapidly mature upon revival in the recommended media. The protocol for the generation of these cells is a three-phase process: an Induction phase that is carried out at bit.bio, Phase 1: Stabilisation for 24 hours, Phase 2: Maturation for a further 9 days, Phase 3: the Maintenance phase. Guide RNAs may be delivered between day 4 and 18 post-thaw and readouts may be performed 5 days after delivery.

The detectability of activation at the protein level is influenced by both the chosen target and the half-life of the protein in question, and so the timepoint of the readout needs to be adjusted to the protein of interest. Note that we found optimal results with guide RNA delivery at day 10 post-thaw, with a readout 5 days later.

Go from cell seeding to gene activation in days

 
Experimental workflow with CRISPRa-Ready glutamatergic neurons
 

Product specifications

Starting material

Human iPSC line

Seeding compatibility

6, 12, 24, 48 & 96 well plates

Shipping info

Dry ice

Donor

Caucasian adult male (skin fibroblast),
Age 55-60 years old
Genotype APOE 3/3

Vial size

Small: >1.5 x 10 viable cells

Quality control

Sterility, protein expression (ICC), functional phagocytosis, purity (FACS), Cas9 functional validation (flow cytometry)

Differentiation method

opti-ox deterministic programming

Recommended seeding density

39,500 cells/cm²

User storage

LN2 or -150°C

Format

Cryopreserved cells

Product use

ioCells are for research use only

Applications

Single gene activations
Pooled CRISPRa screens
Arrayed CRISPRa screens

Technical data

Ready for gene activations

Flow cytometry analysis demonstrates gene activation of P2RY12 upon lentiviral gRNA delivery 

CRISPRa microglia P2RY12 activation flow cytometry

Flow cytometry analysis confirmed robust P2RY12 gene activation in CRISPRa-Ready ioMicroglia following lentiviral delivery of a P2RY12-targeting gRNA on day 10 post-thaw using VPx-VLP for enhanced lentiviral gRNA delivery. Gene activation was assessed 5 days later. 

(A) 41% of cells were GFP+ indicating successful delivery of the P2RY12-targeting gRNA, with 83% of these GFP+ cells showing robust activation. 

(B) The dCas9 transcriptional activator induced a 10.3-fold increase in P2RY12 protein expression (orange) relative to non-targeting control (grey), as measured by geometric mean fluorescence intensity (GMFI) in the GFP+ population. 

Immunocytochemistry analysis demonstrates gene activation of SOX11 upon lentiviral gRNA delivery in a 96-well plate
CRISPRa microglia IBA1 activation ICC quantification combined

SOX11-targeting gRNAs were delivered to CRISPRa-Ready ioMicroglia on day 10 post-thaw via lentiviral transduction in a 96-well plate format, using VPx-VLP for enhanced lentiviral gRNA delivery. After 5 days, transduction and SOX11 activation efficiencies were quantified by immunocytochemistry. Comparable results were observed in 24-well plates.

(A) Representative images showing activation of SOX11 in a majority of transduced (GFP+) cells.

(B) Quantification of GFP+ cells reveals 20-30% transduction efficiency. 

(C) A high SOX11 activation efficiency of 80% was achieved in cells transduced with SOX11 gRNA.

Key microglia functions

Phagocytosis of E. coli particles by CRISPRa-Ready ioMicroglia 

CRISPRa microglia e. coli phagocytosis

Phagocytosis assay using pHrodo E. coli BioParticles at day 10 post-thaw demonstrates efficient uptake of bioparticles by CRISPRa-Ready ioMicroglia, in a similar manner to ioMicroglia Male (io1021) over 24 h. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). The addition of Cytochalasin D (CytoD), an inhibitor of actin polymerisation, significantly decreased E.coli particle uptake as expected.

View the phagocytosis protocol used to generate this data.

CRISPRa-Ready ioMicroglia secrete pro-inflammatory cytokines upon activation

CRISPRa cyotkine secretion

CRISPRa-Ready ioMicroglia were stimulated at day 10 post-thaw with LPS 100 ng/mL and IFNɣ 20 ng/mL for 24 hours. Cell culture supernatants were collected and cytokine secretion levels were quantified by ELISA. Upon activation, these cells secreted TNF-α and IL-6 at comparable levels to wild-type ioMicroglia Male (io1021)

View the cytokine secretion protocol used to generate this data.

Highly characterised and defined

CRISPRa-Ready ioMicroglia show ramified morphology by day 4
CRISPRa microglia brightfield

CRISPRa-Ready ioMicroglia mature rapidly; key ramified morphology can be identified by day 4 and continues through to day 10, similar to ioMicroglia Male (io1021). Day 1 to 10 post-thawing; 100x magnification. 

CRISPRa-Ready ioMicroglia homogeneously express IBA1
CRISPRa microglia IBA1 ICC

Immunofluorescent staining on day 10 post-revival demonstrates homogenous expression of key microglia marker IBA1 and ramified morphology in CRISPRa-Ready ioMicroglia, similar to ioMicroglia Male (io1021). 100x magnification.

Technical data

Gene activation with a flow cytometry and ICC readout

Flow cytometry analysis demonstrates gene activation of P2RY12 upon lentiviral gRNA delivery 

CRISPRa microglia P2RY12 activation flow cytometry

Flow cytometry analysis confirmed robust P2RY12 gene activation in CRISPRa-Ready ioMicroglia following lentiviral delivery of a P2RY12-targeting gRNA on day 10 post-thaw using VPx-VLP for enhanced lentiviral gRNA delivery. Gene activation was assessed 5 days later. 

(A) 41% of cells were GFP+ indicating successful delivery of the P2RY12-targeting gRNA, with 83% of these GFP+ cells showing robust activation. 

(B) The dCas9 transcriptional activator induced a 10.3-fold increase in P2RY12 protein expression (orange) relative to non-targeting control (grey), as measured by geometric mean fluorescence intensity (GMFI) in the GFP+ population. 

Immunocytochemistry analysis demonstrates gene activation of SOX11 upon lentiviral gRNA delivery in a 96-well plate
CRISPRa microglia IBA1 activation ICC quantification combined

SOX11-targeting gRNAs were delivered to CRISPRa-Ready ioMicroglia on day 10 post-thaw via lentiviral transduction in a 96-well plate format, using VPx-VLP for enhanced lentiviral gRNA delivery. After 5 days, transduction and SOX11 activation efficiencies were quantified by immunocytochemistry. Comparable results were observed in 24-well plates.

(A) Representative images showing activation of SOX11 in a majority of transduced (GFP+) cells.

(B) Quantification of GFP+ cells reveals 20-30% transduction efficiency. 

(C) A high SOX11 activation efficiency of 80% was achieved in cells transduced with SOX11 gRNA.

Demonstration of phagocytosis and cytokine release functionality

Phagocytosis of E. coli particles by CRISPRa-Ready ioMicroglia

CRISPRa microglia e. coli phagocytosis

Phagocytosis assay using pHrodo E. coli BioParticles at day 10 post-thaw demonstrates efficient uptake of bioparticles by CRISPRa-Ready ioMicroglia, in a similar manner to ioMicroglia Male (io1021) over 24 h. The graphs display the proportion of cells phagocytosing (left), and the fluorescence intensity per cell displaying degree of phagocytosis (right). The addition of Cytochalasin D (CytoD), an inhibitor of actin polymerisation, significantly decreased E.coli particle uptake as expected.

View the phagocytosis protocol used to generate this data.

CRISPRa-Ready ioMicroglia secrete pro-inflammatory cytokines upon activation
CRISPRa cyotkine secretion

CRISPRa-Ready ioMicroglia were stimulated at day 10 post-thaw with LPS 100 ng/mL and IFNɣ 20 ng/mL for 24 hours. Cell culture supernatants were collected and cytokine secretion levels were quantified by ELISA. Upon activation, these cells secreted TNF-α and IL-6 at comparable levels to wild-type ioMicroglia Male (io1021)

View the cytokine release protocol used to generate this data.

Product resources

CRISPR knockout screening for drug target identification and validation using CRISPR-Ready ioMicroglia Poster
CRISPR knockout screening for drug target identification and validation using CRISPR-Ready ioMicroglia

Schmidt, et al

bit.bio

2024

Download poster
Advancing drug discovery: leveraging CRISPR-Ready ioMicroglia for functional genomics studies Poster
Advancing drug discovery: leveraging CRISPR-Ready ioMicroglia for functional genomics studies

Schmidt et al.

bit.bio

2024

View poster
CRISPR-Cas9 knockout screen in iPSC-derived Neurons identifies new Alzheimer’s disease druggable target Publication
CRISPR-Cas9 knockout screen in iPSC-derived Neurons identifies new Alzheimer’s disease druggable target

Pavlou, et al
Nature Scientific Reports
2023

Using CRISPR-Ready ioGlutamatergic Neurons

Read more
CRISPRko-Ready ioMicroglia user manual | bit.bio User manual
CRISPRko-Ready ioMicroglia user manual | bit.bio

V1

bit.bio

2024

Download
CRISPRa-Ready ioMicroglia user manual | bit.bio User manual
CRISPRa-Ready ioMicroglia user manual | bit.bio
DOC-4238 1.0
Download
Running Large-Scale CRISPR Screens in Human Neurons | bit.bio Webinar
Running Large-Scale CRISPR Screens in Human Neurons | bit.bio

Emmanouil Metzakopian | Vice President, Research and Development | bit.bio

Javier Conde-Vancells | Director Product Management | bit.bio

Watch now

Giving you access to endless and reliable human cells

“To do a genome-level CRISPR screen, with all the necessary replicates, requires billions of cells. Reaching that scale with iPSCs has been a significant challenge, so, many people turn to immortalised cell lines. But these cells are quite different from neurons in the human body. The development of ioCRISPR-Ready Cells is a huge step forward because it allows us to perform large-scale CRISPR screens on cells that closely resemble their in vivo counterparts—it’s a more physiologically relevant way of doing things.” 

 

Manos headshot 2Emmanouil Metzakopian
Former Group leader, UK Dementia Research Institute, Cambridge University.
VP R&D, bit.bio.

minus 80 degree freezer for storage-1-1

Expand your research

Click on the icons to find out more

CRISPR-ready human iPSC-derived cells for arrayed and pooled CRISPR screens.
Thinking of running a CRISPR-screen?
Talk to us today about our custom screening services in all our CRISPR-Ready ioCells
Expand your research
Thinking of running a CRISPR-screen?
Talk to us today about our custom screening services in all our CRISPR-Ready ioCells
CRISPR-ready human iPSC-derived cells for arrayed and pooled CRISPR screens.

Running CRISPR screens can be resource-intensive and require a lot of expertise and preparation. Contact us today to arrange a consultation with our screening experts.


CRISPR-Ready ioCells allow you to identify targets and screen novel compounds using physiologically relevant human cells. 

Study disease mechanisms in microglia-neuron interactions for neuroinflammation studies
Model neurodegenerative disease with physiologically relevant co-cultures
Study disease mechanisms in microglia-neuron interactions
Expand your research
Model neurodegenerative disease with physiologically relevant co-cultures
Study disease mechanisms in microglia-neuron interactions
Study disease mechanisms in microglia-neuron interactions for neuroinflammation studies

Access more than 20 neuronal disease models and 4 microglia disease models with a single co-culture protocol

View the co-culture protocol
Explore
ioGlutamatergic Neuron Disease Models 
ioMicroglia Disease Models

De-risk compound screening with microglia from diverse backgrounds
Model diversity with ioMicroglia Female
De-risk compound screening with microglia from diverse backgrounds
Expand your research
Model diversity with ioMicroglia Female
De-risk compound screening with microglia from diverse backgrounds
De-risk compound screening with microglia from diverse backgrounds

Women are greatly underrepresented in drug development and clinical trials. 
Introducing female derived cells into the early stage of research and drug discovery can help to better address this disparity.

Key applications for Female ioMicroglia in neurodegeneration drug discovery
- Neuroinflammatory in vitro modelling
- Target ID and validation
- Compound screening 

Discover the data

Modeling neurodegenerative disease with human iPSC-derived microglial cells with known mutations.
Model Alzheimer's disease in vitro
Access a range of hiPSC-derived microglia Alzheimer's disease models (APOE & TREM2).
Expand your research
Model Alzheimer's disease in vitro
Access a range of hiPSC-derived microglia Alzheimer's disease models (APOE & TREM2).
Modeling neurodegenerative disease with human iPSC-derived microglial cells with known mutations.

Study the role of microglia in AD with hiSPC-derived ioMicroglia Male engineered to contain Alzheimer’s disease-related risk mutations. 

Homozygous and heterozygous models are available for the following mutations:

APOE C112 
TREM2 R47H

Each ioDisease Model Cell can be paired with the genetically matched ioMicroglia Male wild type control, to help you confidently link genotype to phenotype and make true comparisons in your data.

ioCells catalogue

Human iPSC-derived cells

powered by opti-ox

Consistent. Defined. Scalable.

bitbio-cell_catalogue_header-with-tracker-Desktop-2500x1664